Distribution of the second virial coefficients of globular proteins

George and Wilson [Acta. Cryst. D 50, 361 (1994)] looked at the distribution of values of the second virial coefficient of globular proteins, under the conditions at which they crystallise. They found the values to lie within a fairly narrow range. We have defined a simple model of a generic globular protein. We then generate a set of proteins by picking values for the parameters of the model from a probability distribution. At fixed solubility, this set of proteins is found to have values of the second virial coefficient that fall within a fairly narrow range. The shape of the probability distribution of the second virial coefficient is Gaussian because the second virial coefficient is a sum of contributions from different patches on the protein surface.Comment: 5 pages, including 3 figure

Automated quantification and evaluation of motion artifact on coronary CT angiography images

Abstract Purpose This study developed and validated a Motion Artifact Quantification algorithm to automatically quantify the severity of motion artifacts on coronary computed tomography angiography (CCTA) images. The algorithm was then used to develop a Motion IQ Decision method to automatically identify whether a CCTA dataset is of sufficient diagnostic image quality or requires further correction. Method The developed Motion Artifact Quantification algorithm includes steps to identify the right coronary artery (RCA) regions of interest (ROIs), segment vessel and shading artifacts, and to calculate the motion artifact score (MAS) metric. The segmentation algorithms were verified against ground‐truth manual segmentations. The segmentation algorithms were also verified by comparing and analyzing the MAS calculated from ground‐truth segmentations and the algorithm‐generated segmentations. The Motion IQ Decision algorithm first identifies slices with unsatisfactory image quality using a MAS threshold. The algorithm then uses an artifact‐length threshold to determine whether the degraded vessel segment is large enough to cause the dataset to be nondiagnostic. An observer study on 30 clinical CCTA datasets was performed to obtain the ground‐truth decisions of whether the datasets were of sufficient image quality. A five‐fold cross‐validation was used to identify the thresholds and to evaluate the Motion IQ Decision algorithm. Results The automated segmentation algorithms in the Motion Artifact Quantification algorithm resulted in Dice coefficients of 0.84 for the segmented vessel regions and 0.75 for the segmented shading artifact regions. The MAS calculated using the automated algorithm was within 10% of the values obtained using ground‐truth segmentations. The MAS threshold and artifact‐length thresholds were determined by the ROC analysis to be 0.6 and 6.25 mm by all folds. The Motion IQ Decision algorithm demonstrated 100% sensitivity, 66.7% ± 27.9% specificity, and a total accuracy of 86.7% ± 12.5% for identifying datasets in which the RCA required correction. The Motion IQ Decision algorithm demonstrated 91.3% sensitivity, 71.4% specificity, and a total accuracy of 86.7% for identifying CCTA datasets that need correction for any of the three main vessels. Conclusion The Motion Artifact Quantification algorithm calculated accurate

Fenofibrate-Loaded Biodegradable Nanoparticles for the Treatment of Neovascular Age-Related Macular Degeneration

Fenofibrate-Loaded Biodegradable Nanoparticles for the Treatment of Neovascular Age-Related Macular Degeneration Russell Simmers, Depts. of Physics and Chemistry, with Dr. Qingguo Xu, VCU School of Pharmacy Background: Neovascular age-related macular degeneration (AMD) is a leading cause of visual impairment in the elderly population in the industrialized world. The current treatment for neovascular AMD is anti-vascular endothelial growth factor (anti-VEGF) therapy; however, nearly 40-50% of patients do not fully respond to anti-VEGF therapy. Therefore, non-VEGF therapeutics are required for neovascular AMD treatment. Fenofibrate is a peroxisome proliferator-activated receptor alpha (PPARα) agonist and has demonstrated robust therapeutic effects on neovascular AMD in animal models; however, it must be delivered frequently via intravitreal injection due to quick clearance of the drug from the eye, and may induce injection associated side effects such as retinal detachment, ocular hemorrhage and endophthalmitis. Purpose: To develop and optimize fenofibrate-loaded poly(lactic-co-glycolic acid) (PLGA) nanoparticles (Feno-NP) with high-drug loading and long-lasting drug release profile to effectively treat neovascular AMD for 6-months with one single intravitreal injection. Methods: Feno-NPs were prepared by emulsification method and were fully characterized in terms of particle size, surface charge, morphology and in vitro drug release profiles and the ocular pharmacokinetics studies were performed in rats following intravitreal injection. Efficacy on neovascular-AMD was determined by measuring vascular leakage, vascular permeability, and the numbers of subretinal neovascular (SRNV) and intraretinal neovascular (IRNV) lesions after intravitreal injection of Feno-NPs in a laser-induced choroid neovascularization (CNV) rat model.https://scholarscompass.vcu.edu/uresposters/1387/thumbnail.jp

Cold Fermi-gas with long range interaction in a harmonic trap

We study equilibrium density and spin density profiles for a model of cold one-dimensional spin 1/2 fermions interacting via inverse square interaction and exchange in an external harmonic trap. This model is the well-known spin-Calogero model (sCM) and its fully nonlinear collective field theory description is known. We extend the field theory description to the presence of an external harmonic trap and obtain analytic results for statics and dynamics of the system. For instance, we find how the equilibrium density profile changes upon tuning the interaction strength. The results we obtain for equilibrium configurations are very similar to the ones obtained recently by Ma and Yang [1] for a model of fermions with short ranged interactions. Our main approximation is the neglect of the terms of higher order in spatial derivatives in equations of motion - gradientless approximation [2]. Within this approximation the hydrodynamic equations of motion can be written as a set of decoupled forced Riemann-Hopf equations for the dressed Fermi momenta of the model. This enables us to write analytical solutions for the dynamics of spin and charge. We describe the time evolution of the charge density when an initial non-equilibrium profile is created by cooling the gas with an additional potential in place and then suddenly removing the potential. We present our results as a simple "single-particle" evolution in the phase-space reminiscing a similar description of the dynamics of non-interacting one-dimensional fermions.Comment: 11 pages, 5 figures (figure typo corrected and references added

Simplified three-dimensional tissue clearing and incorporation of colorimetric phenotyping.

Tissue clearing methods promise to provide exquisite three-dimensional imaging information; however, there is a need for simplified methods for lower resource settings and for non-fluorescence based phenotyping to enable light microscopic imaging modalities. Here we describe the simplified CLARITY method (SCM) for tissue clearing that preserves epitopes of interest. We imaged the resulting tissues using light sheet microscopy to generate rapid 3D reconstructions of entire tissues and organs. In addition, to enable clearing and 3D tissue imaging with light microscopy methods, we developed a colorimetric, non-fluorescent method for specifically labeling cleared tissues based on horseradish peroxidase conversion of diaminobenzidine to a colored insoluble product. The methods we describe here are portable and can be accomplished at low cost, and can allow light microscopic imaging of cleared tissues, thus enabling tissue clearing and imaging in a wide variety of settings

Phase transitions in neutron star and magnetars and their connection with high energetic bursts in astrophysics

The phase transition from normal hadronic matter to quark matter in neutron stars (NS) could give rise to several interesting phenomena. Compact stars can have such exotic states up to their surface (called strange stars (SS)) or they can have quark core surrounded by hadronic matter, known as hybrid stars (HS). As the state of matter of the resultant SS/HS is different from the initial hadronic matter, their masses also differ. Therefore, such conversion leads to huge energy release, sometimes of the order of $10^{53}$ ergs. In the present work we study the qualitative energy released by such conversion. Recent observations reveal huge surface magnetic field in certain stars, termed magnetars. Such huge magnetic fields can modify the equations of state (EOS) of the matter describing the star. Therefore, the mass of magnetars are different from normal NS. The energy released during the conversion process from neutron magnetar (NM) to strange magnetar/hybrid magnetar (SS/HS) is different from normal NS to SS/HS conversion. In this work we calculate the energy release during the phase transition in magnetars. The energy released during NS to SS/HS conversion exceeds the energy released during NM to SM/HM conversion. The energy released during the conversion of NS to SS is always of the order of $10^{53}$ ergs. The amount of energy released during such conversion can only be compared to the energy observed during the gamma ray bursts (GRB). The energy liberated during NM to HM conversion is few times lesser, and is not likely to power GRB at cosmological distances. However, the magnetars are more likely to lose their energy from the magnetic poles and can produce giant flares, which are usually associated with magnetars.Comment: 14 pages, 4 figures, 4 table

Quark Stars as inner engines for Gamma Ray Bursts?

A model for Gamma ray bursts inner engine based on quark stars (speculated to exist in nature) is presented. We describe how and why these objects might constitute new candidates for GRB inner engines. At the heart of the model is the onset of exotic phases of quark matter at the surface of such stars, in particular the 2-flavor color superconductivity. A novel feature of such a phase is the generation of particles which are unstable to photon decay providing a natural mechanism for a fireball generation; an approach which is fundamentally different from models where the fireball is generated during collapse or conversion of neutron star to quark star processes. The model is capable of reproducing crucial features of Gamma ray bursts, such as the episodic activity of the engine (multiple and random shell emission) and the two distinct categories of the bursts (two regimes are isolated in the model with \sim 2 s and \sim 81 s burst total duration).Comment: 8 pages, 3 figures, new and more appropriate title. Major changes in the text (aspects of the models discussed in more details), better quality Figure 1 and Figure 2 and added Figure 3, version to appear in Astronomy&Astrophysic

Continuing mortality of vultures in India associated with illegal veterinary use of diclofenac and a potential threat from nimesulide

AbstractThe collapse of South Asia's Gyps vulture populations is attributable to the veterinary use of the non-steroidal anti-inflammatory drug (NSAID) diclofenac. Vultures died after feeding on carcasses of recently-medicated animals. The governments of India, Nepal and Pakistan banned the veterinary use of diclofenac in 2006. We analysed results of 62 necropsies and 48 NSAID assays of liver and/or kidney for vultures of five species found dead in India between 2000 and 2012. Visceral gout and diclofenac were detected in vultures from nine states and three species: Gyps bengalensis, Gyps indicus and Gyps himalayensis. Visceral gout was found in every vulture carcass in which a measurable level of diclofenac was detected. Meloxicam, an NSAID of low toxicity to vultures, was found in two vultures and nimesulide in five vultures. Nimesulide at elevated tissue concentrations was associated with visceral gout in four of these cases, always without diclofenac, suggesting that nimesulide may have similar toxic effects to those of diclofenac. Residues of meloxicam on its own were never associated with visceral gout. The proportion of Gyps vultures found dead in the wild in India with measurable levels of diclofenac in their tissues showed a modest and non-significant decline since the ban on the veterinary use of diclofenac. The prevalence of visceral gout declined less, probably because some cases of visceral gout from 2008 onwards were associated with nimesulide rather than diclofenac. Veterinary use of nimesulide is a potential threat to the recovery of vulture populations.Financial support and assistance for the project from the Director, Indian Veterinary Research Institute (IVRI), the UK Government’s Darwin Initiative and the Royal Society for the Protection of Birds is gratefully acknowledged.This is the accepted manuscript. The final version is available from Cambridge University Press via http://dx.doi.org/10.1017/S003060531500037

Examination of Antibody Responses as a Measure of Exposure to Malaria in the Indigenous Batwa and Their Non-Indigenous Neighbors in Southwestern Uganda

Understanding variations in malaria transmission and exposure is critical to identify populations at risk and enable better targeting of interventions. The indigenous Batwa of southwestern Uganda have a disproportionate burden of malaria infection compared with their non-indigenous neighbors. To better understand the individual- and community-level determinants of malaria exposure, a seroepidemiological study was conducted in 10 local council cells in Kanungu District, Uganda, in April 2014. The Batwa had twice the odds of being seropositive to two Plasmodium falciparum–specific antigens, apical membrane antigen-1 and merozoite surface protein-119, compared with the non-indigenous Bakiga (odds ratio = 2.08, 95% confidence interval = 1.51–2.88). This trend was found irrespective of altitude level and after controlling for cell location. Seroconversion rates in the Batwa were more than twice those observed in the Bakiga. For the Batwa, multiple factors may be associated with higher exposure to malaria and antibody levels relative to their non-indigenous neighbors